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D

Dataset - Class in biggests.tree
Title: Dataset Description: Defines a dataset information object, which holds all the relevant information about a specific dataset loaded.
Dataset(int) - Constructor for class biggests.tree.Dataset
Constructs a new Dataset object with the given id.
datasetFileTextField_caretPositionChanged(InputMethodEvent) - Method in class biggests.gui.PanelLoading
Handles events fired by changes in caret position.
datasetFileTextField_caretUpdate(CaretEvent) - Method in class biggests.gui.PanelLoading
Handles an event fired when the caret position is updated.
datasetFileTextField_inputMethodTextChanged(InputMethodEvent) - Method in class biggests.gui.PanelLoading
Handles the event fired by a change in datasetFileTextField's text.
DatasetTree - Class in biggests.tree
Title: Dataset Tree Description: The dynamic tree which contains the gene expression datasets, matrices and biclusters.
DatasetTree() - Constructor for class biggests.tree.DatasetTree
Constructs a dataset tree with a single (mutable) tree node (called "Datasets").
DEFAULT_CJK - Static variable in class biggests.utils.VerticalTextIcon
Default CJK's rotation.
DEFAULT_MISSING_VALUE - Static variable in class biggests.gui.PanelLoading
Default value for missings.
DEFAULT_MUST_ROTATE - Static variable in class biggests.utils.VerticalTextIcon
Default must rotate rotation.
DEFAULT_ROMAN - Static variable in class biggests.utils.VerticalTextIcon
Default roman rotation.
deleteFolderContent(String) - Static method in class biggests.gui.BiggestsIO
Deletes a directory content.
deleteTempFilesAndDirectory() - Static method in class biggests.gui.PanelAnalyzingMatrixDendrogram
 
DELTA - Static variable in class biggests.gui.PanelBiclustering
Name of the 'delta' parameter (CC-TSB-biclustering).
DESCENDING - Static variable in class biggests.tables.TableSorter
The status that indicates that a specific column is sorted in descending order.
DISCRETIZE_ALPHA - Static variable in class biggests.gui.PanelPreProcessing
'Alpha' discretization parameter name.
DISCRETIZE_PERCENT - Static variable in class biggests.gui.PanelPreProcessing
'Percentage for discretization' parameter name.
DISCRETIZE_SYMBOLS - Static variable in class biggests.gui.PanelPreProcessing
'Number of symbols' parameter name.
DISCRETIZE_THRESHOLD - Static variable in class biggests.gui.PanelPreProcessing
'Threshold' discretization parameter name.
discretizeCheckBox_itemStateChanged(ItemEvent) - Method in class biggests.gui.PanelPreProcessing
Handles the item state changed event fired when the user selects/deselects the discretize check box.
discretizeComboBox_itemStateChanged(ItemEvent) - Method in class biggests.gui.PanelPreProcessing
Handles the item state changed event fired when the user changes the selection in the discretize combo box.
DISCRETIZED - Static variable in class biggests.tree.NodeInfo
The discretized node object type.
displayedSizeRadioButton_itemStateChanged(ItemEvent) - Method in class biggests.gui.SaveChartImageDialog
Handles the event fired when the state of the displayed size radio button changes.
displayFilteringErrorMessage(boolean) - Method in class biggests.gui.PanelPostProcessing
Displays a message when some problem occurs while performing filtering operations.
distanceMetrics - Static variable in class biggests.gui.PanelAnalyzingMatrixDendrogram
Similarity metrics (names to display).
distanceMetricsAlias - Static variable in class biggests.gui.PanelAnalyzingMatrixDendrogram
Similarity metrics alias (the arguments to pass to hierarchical methods).
divider - Variable in class biggests.tables.TableColors
Used to calculate the red or green component value of each colored matrix's cell.
doSaveAs() - Method in class biggests.gui.PanelExpressionChart
 
download(String, String, ProgressBarFrame, String) - Static method in class biggests.gui.BiggestsIO
Downloads the file from the Internet located in the specified address.
downloadGeneAssociationFile(String, String, String, ProgressBarFrame) - Static method in class biggests.gui.BiggestsIO
Downloads gene association file.
downloadGeneAssociationFileButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelFunctionAnalysis
Handles a mouse click event on download gene association file button.
downloadGeneOntologyFile(String, String, String, ProgressBarFrame) - Static method in class biggests.gui.BiggestsIO
Downloads gene ontology file.
downloadGeneOntologyFileButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelFunctionAnalysis
Handles a mouse click event on download gene ontology file button.

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