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Dataset
- Class in
biggests.tree
Title: Dataset Description: Defines a dataset information object, which holds all the relevant information about a specific dataset loaded.
Dataset(int)
- Constructor for class biggests.tree.
Dataset
Constructs a new
Dataset
object with the given id.
datasetFileTextField_caretPositionChanged(InputMethodEvent)
- Method in class biggests.gui.
PanelLoading
Handles events fired by changes in caret position.
datasetFileTextField_caretUpdate(CaretEvent)
- Method in class biggests.gui.
PanelLoading
Handles an event fired when the caret position is updated.
datasetFileTextField_inputMethodTextChanged(InputMethodEvent)
- Method in class biggests.gui.
PanelLoading
Handles the event fired by a change in
datasetFileTextField
's text.
DatasetTree
- Class in
biggests.tree
Title: Dataset Tree Description: The dynamic tree which contains the gene expression datasets, matrices and biclusters.
DatasetTree()
- Constructor for class biggests.tree.
DatasetTree
Constructs a dataset tree with a single (mutable) tree node (called "Datasets").
DEFAULT_CJK
- Static variable in class biggests.utils.
VerticalTextIcon
Default CJK's rotation.
DEFAULT_MISSING_VALUE
- Static variable in class biggests.gui.
PanelLoading
Default value for missings.
DEFAULT_MUST_ROTATE
- Static variable in class biggests.utils.
VerticalTextIcon
Default must rotate rotation.
DEFAULT_ROMAN
- Static variable in class biggests.utils.
VerticalTextIcon
Default roman rotation.
deleteFolderContent(String)
- Static method in class biggests.gui.
BiggestsIO
Deletes a directory content.
deleteTempFilesAndDirectory()
- Static method in class biggests.gui.
PanelAnalyzingMatrixDendrogram
DELTA
- Static variable in class biggests.gui.
PanelBiclustering
Name of the 'delta' parameter (CC-TSB-biclustering).
DESCENDING
- Static variable in class biggests.tables.
TableSorter
The status that indicates that a specific column is sorted in descending order.
DISCRETIZE_ALPHA
- Static variable in class biggests.gui.
PanelPreProcessing
'Alpha' discretization parameter name.
DISCRETIZE_PERCENT
- Static variable in class biggests.gui.
PanelPreProcessing
'Percentage for discretization' parameter name.
DISCRETIZE_SYMBOLS
- Static variable in class biggests.gui.
PanelPreProcessing
'Number of symbols' parameter name.
DISCRETIZE_THRESHOLD
- Static variable in class biggests.gui.
PanelPreProcessing
'Threshold' discretization parameter name.
discretizeCheckBox_itemStateChanged(ItemEvent)
- Method in class biggests.gui.
PanelPreProcessing
Handles the item state changed event fired when the user selects/deselects the discretize check box.
discretizeComboBox_itemStateChanged(ItemEvent)
- Method in class biggests.gui.
PanelPreProcessing
Handles the item state changed event fired when the user changes the selection in the discretize combo box.
DISCRETIZED
- Static variable in class biggests.tree.
NodeInfo
The discretized node object type.
displayedSizeRadioButton_itemStateChanged(ItemEvent)
- Method in class biggests.gui.
SaveChartImageDialog
Handles the event fired when the state of the displayed size radio button changes.
displayFilteringErrorMessage(boolean)
- Method in class biggests.gui.
PanelPostProcessing
Displays a message when some problem occurs while performing filtering operations.
distanceMetrics
- Static variable in class biggests.gui.
PanelAnalyzingMatrixDendrogram
Similarity metrics (names to display).
distanceMetricsAlias
- Static variable in class biggests.gui.
PanelAnalyzingMatrixDendrogram
Similarity metrics alias (the arguments to pass to hierarchical methods).
divider
- Variable in class biggests.tables.
TableColors
Used to calculate the red or green component value of each colored matrix's cell.
doSaveAs()
- Method in class biggests.gui.
PanelExpressionChart
download(String, String, ProgressBarFrame, String)
- Static method in class biggests.gui.
BiggestsIO
Downloads the file from the Internet located in the specified
address
.
downloadGeneAssociationFile(String, String, String, ProgressBarFrame)
- Static method in class biggests.gui.
BiggestsIO
Downloads gene association file.
downloadGeneAssociationFileButton_actionPerformed(ActionEvent)
- Method in class biggests.gui.
PanelFunctionAnalysis
Handles a mouse click event on download gene association file button.
downloadGeneOntologyFile(String, String, String, ProgressBarFrame)
- Static method in class biggests.gui.
BiggestsIO
Downloads gene ontology file.
downloadGeneOntologyFileButton_actionPerformed(ActionEvent)
- Method in class biggests.gui.
PanelFunctionAnalysis
Handles a mouse click event on download gene ontology file button.
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