Uses of Class
biggests.gui.BiggestsFrame

Packages that use BiggestsFrame
biggests.gui   
 

Uses of BiggestsFrame in biggests.gui
 

Fields in biggests.gui declared as BiggestsFrame
protected  BiggestsFrame PanelAnalyzingMatrixTables.mainFrame
          The application's main frame.
protected  BiggestsFrame PanelExpression.mainFrame
          The application's main frame, where this panel is being displayed.
 

Methods in biggests.gui that return BiggestsFrame
 BiggestsFrame PanelAnalyzingFunctionSignificanceGraph.getMainFrame()
          Returns the application's main frame.
 BiggestsFrame PanelAnalyzingMatrixTables.getMainFrame()
          Returns the application's main frame.
 BiggestsFrame PanelBiclustering.getMainFrame()
          Returns the application's main frame.
 BiggestsFrame PanelExpression.getMainFrame()
          Returns the application's main frame, where this panel is being displayed.
 BiggestsFrame PanelFunctionAnalysis.getMainFrame()
          Returns the application's main frame.
 BiggestsFrame PanelPostProcessing.getMainFrame()
          Returns the frame of the application.
 BiggestsFrame PanelPreProcessing.getMainFrame()
          Returns the application's main frame.
 

Methods in biggests.gui with parameters of type BiggestsFrame
static void BiggestsIO.restoreSession(BiggestsFrame frame, java.lang.String pathToSessionArchive)
          Restores a session from a .zip archive file.
static void BiggestsIO.restoreSession2(BiggestsFrame frame, java.lang.String pathToSessionArchive)
          Restores a session from a .zip archive file.
 

Constructors in biggests.gui with parameters of type BiggestsFrame
PanelAnalyzingFunctionSignificanceGraph(BiggestsFrame frame)
          Creates a new function analysis - significance graph panel.
PanelAnalyzingFunctionTable(BiggestsFrame frame)
          Creates a new PanelAnalyzingFunctionTable.
PanelAnalyzingMatrixDendrogram(BiggestsFrame frame)
          Creates a new PanelAnalyzingMatrixDendrogram with options to perform hierarchical clustering over a set of expression data.
PanelAnalyzingMatrixTables(BiggestsFrame frame, int tableType)
          Creates a new panel to display tables.
PanelBiclustering(BiggestsFrame frame)
          Creates a new biclustering panel, with biclustering algorithms options.
PanelExpression(BiggestsFrame frame, int expressionType)
          Creates a new panel to display expression charts.
PanelFunctionAnalysis(BiggestsFrame frame)
          Creates a new PanelFunctionAnalysis.
PanelLoading(BiggestsFrame frame)
          Creates a new loading panel.
PanelPostProcessing(BiggestsFrame frame)
          Creates a new post-processing panel.
PanelPreProcessing(BiggestsFrame frame)
          Creates a new preprocessing panel.
ThreadBiclustering(BiggestsFrame frame, smadeira.biclustering.Biclustering biclustering, javax.swing.tree.TreePath selectionPath)
          Creates a new ThreadBiclusteringFunctionAnalysis
ThreadDownloadGOFiles(BiggestsFrame frame, PanelFunctionAnalysis panel, java.lang.String filename)
          Creates a new thread to download a gene ontology/association file.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Biclustering biclustering, javax.swing.tree.TreePath selectionPath, de.schlichtherle.io.File[] goFiles, de.schlichtherle.io.File directoryFunctionResults, float pvalue)
          Creates a new ThreadFunctionAnalysis.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Biclustering biclustering, javax.swing.tree.TreePath selectionPath, smadeira.ontologizer.GOFrontEnd go, de.schlichtherle.io.File directoryFunctionResults, float pvalue)
          Creates a new ThreadFunctionAnalysis.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Biclustering biclustering, javax.swing.tree.TreePath selectionPath, java.lang.String pathToGeneOntologyFile, java.lang.String pathToGeneAssociationFile, de.schlichtherle.io.File directoryFunctionResults, float pvalue)
          Creates a new ThreadFunctionAnalysis.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Bicluster bicluster, javax.swing.tree.TreePath selectionPath, de.schlichtherle.io.File[] goFiles, de.schlichtherle.io.File directoryBiclusteringFunctionResults, float pvalue)
          Creates a new Function Analysis Thread to perform function analysis on a bicluster.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Bicluster bicluster, javax.swing.tree.TreePath selectionPath, smadeira.ontologizer.GOFrontEnd go, de.schlichtherle.io.File directoryFunctionResults, float pvalue)
          Creates a new ThreadFunctionAnalysis.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.Bicluster bicluster, javax.swing.tree.TreePath selectionPath, java.lang.String pathToGeneOntologyFile, java.lang.String pathToGeneAssociationFile, java.lang.String directoryFunctionResults, float pvalue)
          Creates a new Function Analysis Thread to perform function analysis on a bicluster.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.IMatrix matrix, javax.swing.tree.TreePath selectionPath, de.schlichtherle.io.File[] goFiles, de.schlichtherle.io.File directoryFunctionResults, java.lang.String filenameDOT, float pvalue)
          Creates a new Function Analysis Thread to perform function analysis over a matrix.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.IMatrix matrix, javax.swing.tree.TreePath selectionPath, smadeira.ontologizer.GOFrontEnd go, de.schlichtherle.io.File directoryFunctionResults, java.lang.String filenameDOT, float pvalue)
          Creates a new Function Analysis Thread to perform function analysis on a matrix.
ThreadFunctionAnalysis(BiggestsFrame frame, smadeira.biclustering.IMatrix matrix, javax.swing.tree.TreePath selectionPath, java.lang.String pathToGeneOntologyFile, java.lang.String pathToGeneAssociationFile, de.schlichtherle.io.File directoryFunctionResults, java.lang.String filenameDOT, float pvalue)
          Creates a new Function Analysis Thread to perform function analysis over a matrix.
ThreadHierarchicalClustering(BiggestsFrame frame, HierarchicalClustering hierarchicalClustering, char genesMetric, char conditionsMetric, char clusteringMethod, java.lang.String outputFilesDirectoryPath, java.lang.String jobName)