Uses of Class
biggests.tree.NodeInfo

Packages that use NodeInfo
biggests.gui   
biggests.tree   
 

Uses of NodeInfo in biggests.gui
 

Methods in biggests.gui that return NodeInfo
 NodeInfo PanelAnalyzingMatrixTables.getNodeInfo()
          Returns the node information object containing the object with the data to display in the table.
 

Methods in biggests.gui with parameters of type NodeInfo
 void PanelAnalyzingMatrixTables.paint(NodeInfo nodeInfo, javax.swing.tree.TreePath selectionPath)
          Creates and displays the tables with data retrieved from the node object associated with the given node info object.
 void PanelExpression.paintAllTimePointsChart(NodeInfo nodeInfo, NodeInfo parentNodeInfo)
          Paints an expression chart which data consists of the gene expression values for the genes in a specific nodeInfo matrix object under all conditions of a specific parentNodeInfo matrix object.
 void PanelExpression.paintBiclusterPatternCharts(NodeInfo nodeInfo)
          Paints one bicluster / set of bicluster pattern charts.
 void PanelExpression.paintBiclusterTimePointsCharts(NodeInfo nodeInfo)
          Paints one or a set of bicluster time points charts.
 

Uses of NodeInfo in biggests.tree
 

Methods in biggests.tree that return NodeInfo
 NodeInfo DatasetTree.findBiclusterNodeByIDinSetOfBiclustersNodes(java.util.Enumeration setOfBiclustersNodes, int id)
          Looks for a NodeInfo object of a bicluster or post-processed bicluster object with a specific id.
 NodeInfo NodeInfo.getParentNodeInfo()
          Returns parent node information object.
 

Methods in biggests.tree with parameters of type NodeInfo
 javax.swing.tree.TreePath DatasetTree.addLoadedDataset(NodeInfo originalNodeInfo)
          Adds the loaded dataset to the dataset tree and creates all additional nodes for preprocessed, discretized, biclustered and post-processed matrices of the dataset.
 javax.swing.tree.TreePath DatasetTree.addLoadedDataset(NodeInfo originalNodeInfo, boolean setNewPath)
          Adds the loaded dataset to the dataset tree and creates all additional nodes for preprocessed, discretized, biclustered and post-processed matrices of the dataset.
 javax.swing.tree.TreePath DatasetTree.addNewNode(NodeInfo nodeInfo, javax.swing.tree.TreePath selectionPath, boolean reload)
          Adds a new node to the datasets tree, associated with a node information object.
 void DatasetTree.addNewNode(NodeInfo nodeInfo, javax.swing.tree.TreePath selectionPath, boolean setNewPath, boolean reload)
          Adds a new node to the datasets tree, associated with a node information object.
 

Constructors in biggests.tree with parameters of type NodeInfo
NodeInfo(smadeira.biclustering.NodeObjectInterface nodeObject, int nodeObjectType, javax.swing.tree.TreePath selectionPath, DatasetTree tree, NodeInfo parent, java.util.ArrayList<java.lang.String> infoStrings, java.util.ArrayList<java.lang.String> infoStyles)
          Constructs an object of type NodeInfo (with all the information about a certain node, including a pointer for the node object itself.
NodeInfo(smadeira.biclustering.NodeObjectInterface nodeObject, int nodeObjectType, javax.swing.tree.TreePath selectionPath, DatasetTree tree, NodeInfo parent, java.util.ArrayList<java.lang.String> infoStrings, java.util.ArrayList<java.lang.String> infoStyles, int index)
          Constructs an object of type NodeInfo (with all the information about a certain node, including a pointer for the node object itself.