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B

BICLUSTER_GROUP - Static variable in class biggests.tree.NodeInfo
The bicluster group node object type.
BICLUSTER_SINGLE - Static variable in class biggests.tree.NodeInfo
The single bicluster node object type.
BICLUSTER_TIME_POINTS - Static variable in class biggests.gui.PanelExpression
Constant which defines bicluster time points expression chart type.
biclusteringError(String) - Method in class biggests.gui.ThreadBiclustering
Displays an error message when something went wrong with biclustering algorithm.
biclustersNumberOption_itemStateChanged(ItemEvent) - Method in class biggests.gui.PanelAnalyzingMatrixTables
Fired when the selected item of the biclusters' number combo box changes.
biggests.clustering - package biggests.clustering
 
biggests.gui - package biggests.gui
 
biggests.tables - package biggests.tables
 
biggests.tree - package biggests.tree
 
biggests.utils - package biggests.utils
 
BiggestsApplication - Class in biggests.gui
Title: BiGGEsTS - Biclustering Gene Expression Time Series Description: BiGGEsTS - Application Copyright: Copyright (C) 2007 Joana Gonçalves This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or any later version.
BiggestsApplication() - Constructor for class biggests.gui.BiggestsApplication
Starts the application.
BiggestsFrame - Class in biggests.gui
Title: BiGGEsTS Frame Description: The main frame of the application.
BiggestsFrame() - Constructor for class biggests.gui.BiggestsFrame
Application's main frame constructor.
BiggestsInstall - Class in biggests.utils
Title: BiGGEsTS Install Description: Provides methods for installing the necessary files for BiGGEsTS to execute properly.
BiggestsInstall() - Constructor for class biggests.utils.BiggestsInstall
 
BiggestsInstall() - Method in class biggests.utils.BiggestsInstall
Creates a new instance of BiGGEsTS Install.
BiggestsIO - Class in biggests.gui
Title: BiGGEsTS's Input/Output Description: Provides methods for reading data from and writing data to files, for copying, deleting and creating directories and files.
BiggestsIO() - Constructor for class biggests.gui.BiggestsIO
 
browseButton_actionPerformed(ActionEvent) - Method in class biggests.gui.SaveChartImageDialog
 
browseConversionFileButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelLoading
Handles the mouse event fired by a user's click on browse conversion file button.
browseDatasetFileButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelLoading
 
browseGeneAssociationFilesPathButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelFunctionAnalysis
Handles event fired when the user clicks on browse gene association file path button.
browseGOFilesPathButton_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelFunctionAnalysis
Handles event fired when the user clicks browse gene ontology file path button.
BUF_SIZE - Static variable in class biggests.gui.BiggestsIO
The size of the buffer.

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