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HeatmapColorScheme - Class in biggests.utils
Title: Description: Copyright: Copyright (c) 2006 Company:
HeatmapColorScheme() - Constructor for class biggests.utils.HeatmapColorScheme
 
helpAbout_actionPerformed(ActionEvent) - Method in class biggests.gui.BiggestsFrame
Handles the event fired when the user clicks Help -> About item menu.
HierarchicalClustering - Class in biggests.clustering
Title: Hierarchical Clustering Description: This class implements Hierarchical Clustering over expression data.
HierarchicalClustering(IMatrix) - Constructor for class biggests.clustering.HierarchicalClustering
Creates a new HierarchicalClustering object to perform hierarchical clustering over the set of gene expression data contained in expressionMatrix.
HierarchicalClustering(int, int, double[], double[], double[], double[], int[], int[], String, String[], String[], String[], double[][], int[][]) - Constructor for class biggests.clustering.HierarchicalClustering
Creates a new HierarchicalClustering object to perform hierarchical clustering over the given set of expression data.
hierarchicalClusteringTempFilesDirectoryPath - Static variable in class biggests.gui.PanelAnalyzingMatrixDendrogram
 
hierarchicalClusteringWithFileOutput(char, char, char, String) - Method in class biggests.clustering.HierarchicalClustering
Performs hierarchical clustering over this set of data and writes output information in corresponding files (.GTR, .ATR, .CDT).
hierarchicalClusteringWithTreeOutput(double[][], int[][], double[], boolean, char, char, double[][]) - Method in class biggests.clustering.HierarchicalClustering
Performs hierarchical clustering using pairwise single-, maximum-, centroid-, or average-linkage, as defined by clusteringMethod, on a given set of gene expression data, using the distance metric given by distanceMetric.
HIGHLY_SIGNIFICANT_COLOR - Static variable in class biggests.tables.TableFunctionIndividual
Default color for highly significant terms.

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