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Packages that use ClusterTreeNode | |
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biggests.clustering |
Uses of ClusterTreeNode in biggests.clustering |
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Methods in biggests.clustering that return ClusterTreeNode | |
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ClusterTreeNode[] |
HierarchicalClustering.averageLinkageClustering(double[][] distanceMatrix)
Performs clustering using pairwise average-linking on the given distance matrix. |
ClusterTreeNode[] |
HierarchicalClustering.centroidLinkageClustering(double[][] expressionData,
int[][] missingsMask,
double[] elementsWeights,
double[][] distanceMatrix,
char distanceMetric,
boolean clusteringDimension)
Performs clustering using pairwise centroid-linking on a given set of gene expression data (specified by expressionData
and missingsMask ), using the distance matrix given by
distanceMatrix . |
ClusterTreeNode[] |
HierarchicalClustering.completeLinkageClustering(double[][] distanceMatrix)
Performs clustering using pairwise complete-linkage on the given distance matrix. |
ClusterTreeNode[] |
HierarchicalClustering.hierarchicalClusteringWithTreeOutput(double[][] expressionData,
int[][] missingsMask,
double[] elementsWeights,
boolean clusteringDimension,
char distanceMetric,
char clusteringMethod,
double[][] distanceMatrix)
Performs hierarchical clustering using pairwise single-, maximum-, centroid-, or average-linkage, as defined by clusteringMethod , on a given set of gene expression
data, using the distance metric given by distanceMetric . |
ClusterTreeNode[] |
HierarchicalClustering.singleLinkageClustering(double[][] expressionData,
int[][] missingsMask,
double[] elementsWeights,
double[][] distanceMatrix,
char distanceMetric,
boolean clusteringDimension)
Performs single-linkage hierarchical clustering, using either the distance matrix directly, if available, or by calculating the distances from the expression data matrix. |
Methods in biggests.clustering with parameters of type ClusterTreeNode | |
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void |
HierarchicalClustering.sortClusteringTree(boolean sortingDimension,
double[] clusteringDimensionOrder,
double[] nodesOrder,
int[] nodesCounts,
ClusterTreeNode[] tree)
Sorts the nodes of the tree based on the
tree's structure. |
Constructors in biggests.clustering with parameters of type ClusterTreeNode | |
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ClusterTreeNode(ClusterTreeNode node)
Copy constructor. |
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