A B C D E F G H I J K L M N O P R S T U V W Y Z

R

readConversionEntriesFromFileTXT(String, char) - Static method in class biggests.gui.BiggestsIO
Reads conversion file entries from a text file.
readExpressionDataFromFileTXT(String, char, float) - Static method in class biggests.gui.BiggestsIO
Reads gene expression data from a txt file.
readHeightInput() - Method in class biggests.gui.SaveChartImageDialog
Reads the height input from the corresponding text field.
readParameter(String) - Method in class biggests.gui.PanelBasicIOValidation
Abstract method.
readParameter(String) - Method in class biggests.gui.PanelBiclustering
Reads a parameter from its input text field box.
readParameter(String) - Method in class biggests.gui.PanelPostProcessing
Reads a filtering/sorting parameter from its input text field box.
readParameter(String) - Method in class biggests.gui.PanelPreProcessing
Reads the parameter string for its input parameter text field.
readParameterDouble(String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user and converts it to a floating point (double) value.
readParameterDouble(double, double, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to a floating point value (double and checks if the resulting value is in [min, max] range.
readParameterDouble(double, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to a floating point value (double) and checks if the resulting value is above min value.
readParameterFloat(String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user and converts it to a floating point (float) value.
readParameterFloat(float, float, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to a floating point value (float and checks if the resulting value is in [min, max] range.
readParameterFloat(float, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to a floating point value (float) and checks if the resulting value is above min value.
readParameterInteger(String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user and converts it to an integer value.
readParameterInteger(int, int, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to an integer value and checks if the resulting value is in [min, max] range.
readParameterInteger(int, String) - Method in class biggests.gui.PanelBasicIOValidation
Reads parameterToRead entered by the user, converts it to an integer value and checks if the resulting value is above min value.
readParameterInteger(int, int, String) - Method in class biggests.gui.PanelBiclustering
 
readWidthInput() - Method in class biggests.gui.SaveChartImageDialog
Reads the width input from the corresponding textfield.
recalculate_actionPerformed(ActionEvent) - Method in class biggests.gui.PanelAnalyzingFunctionTable
Handles the mouse event fired when the user clicks on recalculate functions button.
RED_GREEN_SCHEME - Static variable in class biggests.utils.HeatmapColorScheme
 
reload() - Method in class biggests.tree.DatasetTree
Reloads the tree model, so all (new) nodes get visible.
repaintPanelAnalyzingFunctionTable(GeneSetResult, float) - Method in class biggests.gui.PanelAnalyzingFunctionTable
Repaints function analysis panel after recalculating biological relevance of a bicluster.
repaintPanelAnalyzingFunctionTable(Hashtable<Integer, BiologicalRelevanceSummary>) - Method in class biggests.gui.PanelAnalyzingFunctionTable
Repaints function analysis panel after recalculating biological relevance of a biclusters' group.
repaintPanelAnalyzingFunctionTable() - Method in class biggests.gui.PanelAnalyzingFunctionTable
Repaints function analysis panel after recalculating biological relevance of an expression matrix (original, preprocessed or discretized one).
repaintTimePointsChart(int, int, boolean) - Method in class biggests.gui.PanelExpressionChart
Returns a new time points (bicluster or all time points) chart panel, repainted from the the current one.
restoreSession(BiggestsFrame, String) - Static method in class biggests.gui.BiggestsIO
Restores a session from a .zip archive file.
restoreSession2(BiggestsFrame, String) - Static method in class biggests.gui.BiggestsIO
Restores a session from a .zip archive file.
restrictedErrorsECCCCheckBox_itemStateChanged(ItemEvent) - Method in class biggests.gui.PanelBiclustering
Handles the item state changed event fired when the user selects/deselects restricted errors for e-CCC-Biclustering algorithm check box.
ROTATE_DEFAULT - Static variable in class biggests.utils.VerticalTextIcon
The default rotation.
ROTATE_LEFT - Static variable in class biggests.utils.VerticalTextIcon
The left rotation option.
ROTATE_NONE - Static variable in class biggests.utils.VerticalTextIcon
The no rotation option.
ROTATE_RIGHT - Static variable in class biggests.utils.VerticalTextIcon
The right rotation option.
run() - Method in class biggests.gui.ThreadBiclustering
Overrides Thread's run method.
run() - Method in class biggests.gui.ThreadDownloadGOFiles
Overrides Thread's run method.
run() - Method in class biggests.gui.ThreadFunctionAnalysis
Overrides Thread's run method.
run() - Method in class biggests.gui.ThreadHierarchicalClustering
 
run() - Method in class biggests.gui.ThreadPostProcessing
Overrides Thread's run method.

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