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Hierarchy For All Packages
Package Hierarchies:
biggests.clustering
,
biggests.gui
,
biggests.tables
,
biggests.tree
,
biggests.utils
Class Hierarchy
java.lang.Object
javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
biggests.tables.
TableSorter
biggests.tables.
TableSorterFunctionGroup
biggests.tables.
TableSorterFunctionIndividual
biggests.tables.
TableSorterValues
biggests.tables.
TableSorterVerticalHeader
biggests.tables.
TableSorterSymbols
biggests.utils.
Arrow
(implements javax.swing.Icon)
biggests.gui.
BiggestsApplication
biggests.gui.
BiggestsFrame_this_windowStateAdapter
(implements java.awt.event.WindowStateListener)
biggests.utils.
BiggestsInstall
biggests.gui.
BiggestsIO
biggests.clustering.
ClusterTreeNode
biggests.clustering.
ClusterTreeNodeComparator
(implements java.util.Comparator<T>)
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
javax.swing.table.DefaultTableCellRenderer (implements java.io.Serializable, javax.swing.table.TableCellRenderer)
javax.swing.table.DefaultTableCellRenderer.UIResource (implements javax.swing.plaf.UIResource)
biggests.tables.
TableFunctionGroup.NumberCellRenderer
biggests.tables.
TableFunctionGroup.FloatCellRenderer
biggests.tables.
TableFunctionIndividual.NumberCellRenderer
biggests.tables.
TableFunctionIndividual.FloatCellRenderer
biggests.tables.
TableValues.NumberCellRenderer
biggests.tables.
TableValues.FloatCellRenderer
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.jfree.chart.ChartPanel (implements java.awt.event.ActionListener, org.jfree.chart.event.ChartChangeListener, org.jfree.chart.event.ChartProgressListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.print.Printable, java.io.Serializable)
biggests.gui.
PanelExpressionChart
biggests.gui.
PanelAnalyzingFunctionSignificanceGraph
biggests.gui.
PanelAnalyzingFunctionTable
biggests.gui.
PanelAnalyzingMatrixDendrogram
biggests.gui.
PanelAnalyzingMatrixTables
biggests.gui.
PanelBasicIOValidation
biggests.gui.
PanelBiclustering
biggests.gui.
PanelPostProcessing
biggests.gui.
PanelPreProcessing
biggests.gui.
PanelExpression
biggests.gui.
PanelFunctionAnalysis
biggests.gui.
PanelLoading
javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
biggests.tables.
TableFunctionGroup
biggests.tables.
TableFunctionIndividual
biggests.tables.
TablePreview
biggests.tables.
TableValues
biggests.tables.
TableColors
biggests.tables.
TableColorsWithMissingValues
biggests.tables.
TableSymbols
biggests.tables.
TableSymbolsWithMissingValues
biggests.tables.
TableValuesWithMissingValues
javax.swing.table.JTableHeader (implements javax.accessibility.Accessible, javax.swing.event.TableColumnModelListener)
biggests.tables.
TableHeader
biggests.tables.
TableHeaderFunction
javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
biggests.tree.
DatasetTree
(implements java.io.Serializable)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
biggests.utils.
ProgressBarFrame
biggests.gui.
SaveChartImageDialog
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
biggests.gui.
BiggestsFrame
(implements java.awt.event.ActionListener)
java.awt.event.ComponentAdapter (implements java.awt.event.ComponentListener)
biggests.gui.
BiggestsFrame_this_componentAdapter
biggests.tree.
Dataset
(implements java.io.Serializable)
javax.swing.filechooser.FileFilter
biggests.utils.
FileFilterDirectory
biggests.utils.
FileFilterExtension
biggests.utils.
HeatmapColorScheme
java.awt.event.HierarchyBoundsAdapter (implements java.awt.event.HierarchyBoundsListener)
biggests.gui.
PanelExpression_this_hierarchyBoundsAdapter
biggests.utils.
JVMInfo
java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
biggests.gui.
PanelAnalyzingFunctionTable_functionGroupTable_mouseAdapter
biggests.gui.
PanelBiclustering_allowMissingsButton_mouseAdapter
biggests.tables.
TableFunctionIndividual_this_mouseAdapter
biggests.tables.
TableValues_this_mouseAdapter
biggests.tree.
NodeInfo
(implements java.io.Serializable)
biggests.gui.
PanelAnalyzingFunctionSignificanceGraph_saveGraph_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelAnalyzingFunctionSignificanceGraph_zoomSlider_changeAdapter
(implements javax.swing.event.ChangeListener)
biggests.gui.
PanelAnalyzingFunctionTable_applyButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelAnalyzingFunctionTable_recalculate_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelAnalyzingMatrixDendrogram_applyButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelAnalyzingMatrixDendrogram_clusterConditionsCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelAnalyzingMatrixDendrogram_clusterGenesCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelAnalyzingMatrixTables_biclustersNumberOption_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelBiclustering_algorithmsList_listSelectionAdapter
(implements javax.swing.event.ListSelectionListener)
biggests.gui.
PanelBiclustering_applyButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelBiclustering_geneShiftsCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelBiclustering_restrictedErrorsECCCCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelBiclustering_signChangesCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelBiclustering_timeLagsCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelExpression_normalize_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelExpression_option_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelFunctionAnalysis_browseGeneAssociationFilesPathButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelFunctionAnalysis_browseGOFilesPathButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelFunctionAnalysis_downloadGeneAssociationFileButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelFunctionAnalysis_downloadGeneOntologyFileButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelFunctionAnalysis_goFrontEndCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelLoading_browseConversionFileButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelLoading_browseDatasetFileButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelLoading_datasetFileTextField_caretAdapter
(implements javax.swing.event.CaretListener)
biggests.gui.
PanelLoading_datasetFileTextField_inputMethodAdapter
(implements java.awt.event.InputMethodListener)
biggests.gui.
PanelLoading_geneIDCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelLoading_loadButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelPostProcessing_applyButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelPostProcessing_filterCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPostProcessing_filterCriteriaList_listSelectionAdapter
(implements javax.swing.event.ListSelectionListener)
biggests.gui.
PanelPostProcessing_sortCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPostProcessing_sortCriteriaList_listSelectionAdapter
(implements javax.swing.event.ListSelectionListener)
biggests.gui.
PanelPreProcessing_applyButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
PanelPreProcessing_discretizeCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_discretizeComboBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_fillAverageRowButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_fillCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_fillKNeighborsButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_fillValueButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_filterCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_filterPercentGenesButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_normalizeByGeneButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_normalizeCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_normalizeMean0Std1Button_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_normalizeMeanStdValuesButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_normalizeOverallButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
PanelPreProcessing_smoothCheckBox_itemAdapter
(implements java.awt.event.ItemListener)
biggests.utils.
ProgressBarFrame_cancelButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
SaveChartImageDialog_browseButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
SaveChartImageDialog_cancelButton_actionAdapter
(implements java.awt.event.ActionListener)
biggests.gui.
SaveChartImageDialog_displayedSizeRadioButton_itemAdapter
(implements java.awt.event.ItemListener)
biggests.gui.
SaveChartImageDialog_saveButton_actionAdapter
(implements java.awt.event.ActionListener)
java.lang.Thread (implements java.lang.Runnable)
biggests.gui.
ThreadBiclustering
biggests.gui.
ThreadDownloadGOFiles
biggests.gui.
ThreadFunctionAnalysis
biggests.gui.
ThreadHierarchicalClustering
biggests.gui.
ThreadPostProcessing
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
biggests.utils.
InvalidNodeObjectTypeException
TimeConsumingTasks
biggests.clustering.
AbstractMetricClustering
biggests.clustering.
HierarchicalClustering
edu.stanford.genetics.treeview.app.TreeViewApp (implements java.awt.event.WindowListener)
edu.stanford.genetics.treeview.app.LinkedViewApp
biggests.gui.
MyTreeViewApp
biggests.utils.
VerticalTextIcon
(implements javax.swing.Icon, java.beans.PropertyChangeListener)
biggests.utils.
VerticalTextIconWithArrow
java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
biggests.gui.
BiggestsFrame_this_windowAdapter
biggests.utils.
ProgressBarFrame_this_windowAdapter
Overview
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Deprecated
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Help
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