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java.lang.Objectjava.lang.Thread
biggests.gui.ThreadBiclustering
public class ThreadBiclustering
Title: Biclustering and function analysis thread.
Description: Thread to apply biclustering algorithms and function analysis (long time consuming task) while displaying a progress bar dialog to the user.
Copyright: Copyright (C) 2007 Joana Gonçalves This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
Nested Class Summary |
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Nested classes/interfaces inherited from class java.lang.Thread |
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java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler |
Field Summary |
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Fields inherited from class java.lang.Thread |
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MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY |
Constructor Summary | |
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ThreadBiclustering(BiggestsFrame frame,
Biclustering biclustering,
javax.swing.tree.TreePath selectionPath)
Creates a new ThreadBiclusteringFunctionAnalysis |
Method Summary | |
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void |
biclusteringError(java.lang.String message)
Displays an error message when something went wrong with biclustering algorithm. |
GOFrontEnd |
computeBiclusters()
Computes biclusters and GO frontend for function analysis. |
void |
run()
Overrides Thread 's run method. |
Methods inherited from class java.lang.Thread |
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activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public ThreadBiclustering(BiggestsFrame frame, Biclustering biclustering, javax.swing.tree.TreePath selectionPath)
ThreadBiclusteringFunctionAnalysis
frame
- the BiGGEsTS main windowbiclustering
- Biclustering
object to apply
biclustering algorithm and function analysis on toselectionPath
- the selected TreePath
(path
to biclustering node in the dataset tree)Method Detail |
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public void run()
Thread
's run
method. Performs the
actual task of this working thread (applying the required biclustering
algorithm and performing function analysis on a given biclusters group).
run
in interface java.lang.Runnable
run
in class java.lang.Thread
Thread.run()
public GOFrontEnd computeBiclusters() throws java.lang.Exception, java.lang.StackOverflowError, java.lang.OutOfMemoryError
java.lang.Exception
- if biclusters cannot be computed
java.lang.StackOverflowError
- if there is a stack overflow
java.lang.OutOfMemoryError
- if runs out of memorypublic void biclusteringError(java.lang.String message)
message
- String
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