biggests.gui
Class MyTreeViewApp

java.lang.Object
  extended by edu.stanford.genetics.treeview.app.TreeViewApp
      extended by edu.stanford.genetics.treeview.app.LinkedViewApp
          extended by biggests.gui.MyTreeViewApp
All Implemented Interfaces:
java.awt.event.WindowListener, java.util.EventListener

 class MyTreeViewApp
extends edu.stanford.genetics.treeview.app.LinkedViewApp

Title:

Description:

Copyright: Copyright (C) 2007 Joana Gonçalves This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.


Field Summary
 
Fields inherited from class edu.stanford.genetics.treeview.app.TreeViewApp
announcementUrl, updateUrl, versionTag, windows
 
Constructor Summary
MyTreeViewApp()
          Creates a new MyTreeViewApp to present results of hierarchical clustering over a set of expression data.
MyTreeViewApp(edu.stanford.genetics.treeview.XmlConfig xmlConfig)
          Constructor for MyTreeViewApp object.
 
Method Summary
protected  void endProgram()
          Reimplements LinkedViewApp's endProgram method (the original method would call System.exit(0) and cause BiGGEsTS application to terminate, which we don't want to happen here).
 void windowClosed(java.awt.event.WindowEvent e)
          Overrides LinkedViewApp's windowClosed method.
 
Methods inherited from class edu.stanford.genetics.treeview.app.LinkedViewApp
getVersionTag, main, openNew, openNew, openNewNW
 
Methods inherited from class edu.stanford.genetics.treeview.app.TreeViewApp
assignPresetsNodes, closeAllWindows, getAnnouncementUrl, getArrayUrlPresets, getGeneUrlPresets, getGlobalConfig, getPluginFactories, getPluginFactory, getPluginNames, getUpdateUrl, rebuildWindowMenus, registerPlugin, standardStartup, windowActivated, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

MyTreeViewApp

public MyTreeViewApp()
Creates a new MyTreeViewApp to present results of hierarchical clustering over a set of expression data.


MyTreeViewApp

public MyTreeViewApp(edu.stanford.genetics.treeview.XmlConfig xmlConfig)
Constructor for MyTreeViewApp object. Takes configuration from xmlConfig.

Parameters:
xmlConfig - XmlConfig the configuration file
Method Detail

windowClosed

public void windowClosed(java.awt.event.WindowEvent e)
Overrides LinkedViewApp's windowClosed method.

Specified by:
windowClosed in interface java.awt.event.WindowListener
Overrides:
windowClosed in class edu.stanford.genetics.treeview.app.TreeViewApp
Parameters:
e - WindowEvent

endProgram

protected void endProgram()
Reimplements LinkedViewApp's endProgram method (the original method would call System.exit(0) and cause BiGGEsTS application to terminate, which we don't want to happen here).