|
|||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | ||||||||
java.lang.Objectbiggests.tree.NodeInfo
public class NodeInfo
Title: Node Information Object
Description: Contains information about the content of a specific node in the dataset tree.
Copyright: Copyright (C) 2007 Joana Gonçalves This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
| Field Summary | |
|---|---|
static int |
BICLUSTER_GROUP
The bicluster group node object type. |
static int |
BICLUSTER_SINGLE
The single bicluster node object type. |
static int |
DISCRETIZED
The discretized node object type. |
static int |
ORIGINAL
The original node object type. |
static int |
POSTPROCESSED_GROUP
The post-processed group node object type. |
static int |
POSTPROCESSED_SINGLE
The post-processed single node object type. |
static int |
PREPROCESSED
The preprocessed node object type. |
static long |
serialVersionUID
|
static boolean |
SYMBOLS
The symbol values matrix data type. |
static boolean |
VALUES
The float values matrix data type. |
| Constructor Summary | |
|---|---|
NodeInfo(NodeObjectInterface nodeObject,
int nodeObjectType,
javax.swing.tree.TreePath selectionPath,
DatasetTree tree,
NodeInfo parent,
java.util.ArrayList<java.lang.String> infoStrings,
java.util.ArrayList<java.lang.String> infoStyles)
Constructs an object of type NodeInfo (with all the information about
a certain node, including a pointer for the node object itself. |
|
NodeInfo(NodeObjectInterface nodeObject,
int nodeObjectType,
javax.swing.tree.TreePath selectionPath,
DatasetTree tree,
NodeInfo parent,
java.util.ArrayList<java.lang.String> infoStrings,
java.util.ArrayList<java.lang.String> infoStyles,
int index)
Constructs an object of type NodeInfo (with all the information about
a certain node, including a pointer for the node object itself. |
|
| Method Summary | |
|---|---|
protected void |
addStylesToDocument(javax.swing.text.StyledDocument doc)
Adds a set of common styles to StyledDocument doc |
int |
findInfoString(java.lang.String s)
Finds a specific information string. |
boolean |
getDataType()
Returns the node object data type value. |
int |
getFakeID()
Returns the ID of the post-processed bicluster. |
int |
getId()
Returns the number id of the NodeInfo |
javax.swing.text.StyledDocument |
getInfo()
Returns a styled document containing information about this node. |
java.util.ArrayList<java.lang.String> |
getInfoStrings()
Returns information strings. |
java.util.ArrayList<java.lang.String> |
getInfoStyles()
Returns information styles. |
java.lang.String |
getName()
Returns the name of this node information object. |
NodeObjectInterface |
getNodeObject()
Returns the node object associated with the current node information object. |
int |
getNodeObjectType()
Returns the node object type. |
NodeInfo |
getParentNodeInfo()
Returns parent node information object. |
boolean |
isGeneID()
Returns genes' names type. |
void |
setInfoStrings(java.util.ArrayList<java.lang.String> strings)
Sets information strings. |
void |
setInfoStyles(java.util.ArrayList<java.lang.String> styles)
Sets information styles. |
java.lang.String |
toString()
Overrides the default toString method. |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Field Detail |
|---|
public static final long serialVersionUID
public static final int ORIGINAL
public static final int PREPROCESSED
public static final int DISCRETIZED
public static final int BICLUSTER_GROUP
public static final int BICLUSTER_SINGLE
public static final int POSTPROCESSED_GROUP
public static final int POSTPROCESSED_SINGLE
public static final boolean VALUES
public static final boolean SYMBOLS
| Constructor Detail |
|---|
public NodeInfo(NodeObjectInterface nodeObject,
int nodeObjectType,
javax.swing.tree.TreePath selectionPath,
DatasetTree tree,
NodeInfo parent,
java.util.ArrayList<java.lang.String> infoStrings,
java.util.ArrayList<java.lang.String> infoStyles,
int index)
throws InvalidNodeObjectTypeException
NodeInfo (with all the information about
a certain node, including a pointer for the node object itself.
nodeObject - NodeObjectInterface the node objectnodeObjectType - int the type of the node object:NodeInfo.ORIGINALNodeInfo.PREPROCESSEDNodeInfo.DISCRETIZEDNodeInfo.BICLUSTER_GROUPNodeInfo.BICLUSTER_SINGLENodeInfo.POSTPROCESSED_GROUPNodeInfo.POSTPROCESSED_SINGLEselectionPath - TreePath the selected pathtree - DatasetTree the dataset treeparent - the parent NodeInfo of this NodeInfo object's
parent group (only for post-processed biclusters NodeInfo objects)infoStrings - the information String[]infoStyles - the styles String[]index - int the index of the bicluster in the array
of biclusters (it applies only to post-processed biclusters
InvalidNodeObjectTypeException - if the type of the node object is not valid
public NodeInfo(NodeObjectInterface nodeObject,
int nodeObjectType,
javax.swing.tree.TreePath selectionPath,
DatasetTree tree,
NodeInfo parent,
java.util.ArrayList<java.lang.String> infoStrings,
java.util.ArrayList<java.lang.String> infoStyles)
throws InvalidNodeObjectTypeException
NodeInfo (with all the information about
a certain node, including a pointer for the node object itself.
nodeObject - NodeObjectInterface the node objectnodeObjectType - int the type of the node object:NodeInfo.ORIGINALNodeInfo.PREPROCESSEDNodeInfo.DISCRETIZEDNodeInfo.BICLUSTER_GROUPNodeInfo.BICLUSTER_SINGLENodeInfo.POSTPROCESSED_GROUPNodeInfo.POSTPROCESSED_SINGLEselectionPath - TreePath the selected pathtree - DatasetTree the dataset treeparent - the parent NodeInfo of this NodeInfo objectinfoStrings - the information String[]infoStyles - the styles String[]
InvalidNodeObjectTypeException - if the type of the node object is not valid| Method Detail |
|---|
public java.lang.String getName()
String name of this node information objectpublic int getId()
NodeInfo object.
- Returns:
- int the number id
public int getNodeObjectType()
NodeInfo.ORIGINALNodeInfo.PREPROCESSEDNodeInfo.DISCRETIZEDNodeInfo.BICLUSTER_GROUPNodeInfo.BICLUSTER_SINGLENodeInfo.POSTPROCESSED_GROUPNodeInfo.POSTPROCESSED_SINGLE
public boolean getDataType()
NodeInfo.VALUESNodeInfo.SYMBOLS
public boolean isGeneID()
true - genes' names are gene IDs (gene ontology names)false - genes' names are probeset IDs (IDs used in the mRNA measurements
public NodeObjectInterface getNodeObject()
public NodeInfo getParentNodeInfo()
public java.util.ArrayList<java.lang.String> getInfoStrings()
public java.util.ArrayList<java.lang.String> getInfoStyles()
public int getFakeID()
public void setInfoStrings(java.util.ArrayList<java.lang.String> strings)
strings - information ArrayListpublic void setInfoStyles(java.util.ArrayList<java.lang.String> styles)
styles - information ArrayList styles
public javax.swing.text.StyledDocument getInfo()
throws javax.swing.text.BadLocationException
javax.swing.text.BadLocationException - if strings or styles could not be foundpublic int findInfoString(java.lang.String s)
s - the information String to look for
protected void addStylesToDocument(javax.swing.text.StyledDocument doc)
StyledDocument doc
doc - the StyledDocument to add styles topublic java.lang.String toString()
toString method. Returns a formatted
string with the name to display in the corresponding dataset tree node.
toString in class java.lang.Object
|
|||||||||
| PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
| SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD | ||||||||