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java.lang.Objectjava.lang.Thread
biggests.gui.ThreadDownloadGOFiles
public class ThreadDownloadGOFiles
Title: Download gene ontology files thread
Description: Thread to download gene ontology files from www.geneontology.org (long time consuming task) while displaying a progress bar dialog to the user. This task always preceeds function analysis, so when download of gene ontology files finishes, this thread also calls a method to apply biclustering and function analysis algorithms.
Copyright: Copyright (C) 2007 Joana Gonçalves This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
| Nested Class Summary |
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| Nested classes/interfaces inherited from class java.lang.Thread |
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java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler |
| Field Summary |
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| Fields inherited from class java.lang.Thread |
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MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY |
| Constructor Summary | |
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ThreadDownloadGOFiles(BiggestsFrame frame,
PanelFunctionAnalysis panel,
java.lang.String filename)
Creates a new thread to download a gene ontology/association file. |
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| Method Summary | |
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void |
run()
Overrides Thread's run method. |
| Methods inherited from class java.lang.Thread |
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activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield |
| Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
| Constructor Detail |
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public ThreadDownloadGOFiles(BiggestsFrame frame,
PanelFunctionAnalysis panel,
java.lang.String filename)
frame - BiggestsFrame the application's main
frame, which contains the URLs of gene ontology/association
filespanel - PanelFunctionAnalysis the function
analysis panel for which the file will be downloadedfilename - String the name of the file to download| Method Detail |
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public void run()
Thread's run method. Performs the
actual task of this working thread (download a gene
ontology/association file).
run in interface java.lang.Runnablerun in class java.lang.ThreadThread.run()
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